特级丰满少妇一级AAAA爱毛片,亚洲AV无码专区一级婬片毛片,真实的国产乱ⅩXXX实拍,中文字幕一区二区三区四区,国产成人无码91精品一区69

 分類(lèi): 時(shí)空組學(xué), 智能制造
  1. Open the script file

“`markdown

source(‘xxx’) # ‘xxx’ script path, for example ‘C:/Users/R/Desktop/qq.R’

“`

  1. Create a Seurat object and generate a spatial clustering plot

– `FilePath`: Directory path containing “barcode.tsv.gz, barcode_pos.tsv.gz, feature.tsv.gz, matrix.mtx.gz” files.

– `barcode_pos_file`: File path for “barcode_pos.tsv.gz.”

– `out_path`: Output directory.

– `png_path`: H&E staining image (.png format). If using .tiff format, make sure to convert it, and consider reducing the resolution during conversion to avoid large .png files that may fail to load. Note that the Seurat object’s name must be “object.”

“`R

object <- Create_object(

FilePath = ‘E:/AAAWork/BSTViewer_project/subdata/L13_heAuto/’,

barcode_pos_file = ‘E:/AAAWork/BSTViewer_project/subdata/L13_heAuto/barcodes_pos.tsv.gz’,

out_path = ‘C:/Users/R/Desktop/temp/Cluster/’,

png_path = ‘C:/Users/R/Desktop/temp/he.png’,

min.cells = 10, ????????# Minimum cells for a gene to be retained, adjustable (default: 10).

min.features = 100, ????# Minimum features for a cell to be retained, adjustable (default: 100).

dims = 1:30, ?????????# Number of principal components for subsequent analysis, adjustable (default: 1:30).

resolution = 0.5, ??????# Set the granularity for downstream analysis, higher values yield more clusters, adjustable (default: 0.5).

point_size = 3, ???????# Point size, adjustable based on matrix file level (smaller level requires smaller values).

width = 12, ?????????# Output image width, adjustable (default: 12).

height = 5, ?????????# Output image height, adjustable (default: 5).

Cluster = T, ????????# Perform clustering analysis (default: False).

label = T ??????????# Output clustered image with labels (default: True).

)

“`

umap_cluster_label

  1. UMI Statistics

“`R

object <- Create_object(

FilePath = ‘E:/AAAWork/BSTViewer_project/subdata/L13_heAuto/’,

barcode_pos_file = ‘E:/AAAWork/BSTViewer_project/subdata/L13_heAuto/barcodes_pos.tsv.gz’,

out_path = ‘C:/Users/R/Desktop/temp/UMI_stat/’,

png_path = ‘C:/Users/R/Desktop/temp/he.png’,

point_size = 3, ????# Same as above.

width = 12, ??????# Same as above.

height = 5, ????????# Same as above.

UMI_stat = T ?????# Whether to perform UMI statistics (default: True).

)

“`

UMI_viol_heatmap

  1. nFeature Statistics

“`R

object <- Create_object(

FilePath = ‘E:/AAAWork/BSTViewer_project/subdata/L13_heAuto/’,

barcode_pos_file = ‘E:/AAAWork/BSTViewer_project/subdata/L13_heAuto/barcodes_pos.tsv.gz’,

out_path = ‘C:/Users/R/Desktop/temp/Gene_stat/’,

png_path = ‘C:/Users/R/Desktop/temp/he.png’,

point_size = 2, ????????# Same as above.

width = 12, ??????????# Same as above.

height = 5, ??????????# Same as above.

nFeature_stat = T ????# Whether to perform nFeature statistics (default: True).

)

nFeature_viol_heatmap

  1. Output Marker Genes for Each Cluster and Create Expression Heatmaps for Single Genes

“`R

object <- Create_object(

FilePath = ‘E:/AAAWork/BSTViewer_project/subdata/L13_heAuto/’,

barcode_pos_file = ‘E:/AAAWork/BSTViewer_project/subdata/L13_heAuto/barcodes_pos.tsv.gz’,

out_path = ‘C:/Users/R/Desktop/temp/Single_gene_1/’,

png_path = ‘C:/Users/R/Desktop/temp/he.png’,

point_size = 2, ????????????????# Same as above.

Gene_stat = T, ????????????????# Whether to generate marker gene plots (default: False).

top_gene = 1, ????????????????# Number of top marker genes to select for each cluster, adjustable (default: 1).

min.pct = 0.25, ???????????????# Minimum percentage of a gene’s presence in any two cell groups, adjustable (default: 0.25).

logfc.threshold = 0.25, ?????????# Log-fold change threshold, adjustable (default: 0.25).

markpic_width = 8, ???????????# Width of violin and tsne plots, adjustable.

markpic_height = 12 ??????????# Height of violin and tsne plots, adjustable.

)“`

Heatmaps?list

  1. Generate Cluster Plots for Specific Gene(s)

“`R

object <- Create_object(

FilePath = ‘E:/AAAWork/BSTViewer_project/subdata/L13_heAuto/’,

barcode_pos_file = ‘E:/AAAWork/BSTViewer_project/subdata/L13_heAuto/barcodes_pos.tsv.gz’,

out_path = ‘C:/Users/R/Desktop/temp/Test/Single_gene_2/’,

png_path = ‘C:/Users/R/Desktop/temp/he.png’,

point_size = 2.6, ???????????????# Same as above.

Gene_stat = T, ????????????????# Whether to generate marker gene plots (default: False).

Custom_gene = T, ????????????# Whether to perform custom gene plotting (default: False).

alpha_continuous = c(0.5,1), ???# Adjust transparency based on gene expression levels.

gene_list = c(‘Hpca’) ?????????# List of genes to plot, you can input multiple genes.

)

“`

Hpca

Generate Cluster Plots for Specific Gene(s) with Dark Background

“`R

object <- Create_object(

FilePath = ‘E:/AAAWork/BSTViewer_project/subdata/L13_heAuto/’,

barcode_pos_file = ‘E:/AAAWork/BSTViewer_project/subdata/L13_heAuto/barcodes_pos.tsv.gz’,

out_path = ‘C:/Users/R/Desktop/temp/Test/Single_gene_2/’,

png_path = ‘C:/Users/R/Desktop/temp/he.png’,

point_size = 2.6, ?????????????????# Same as above.

Gene_stat = T, ??????????????????# Whether to generate marker gene plots (default: False).

Custom_gene = T, ??????????????# Whether to perform custom gene plotting (default: False).

dark_background = T, ??????????# Use a dark background (default: False).

gene_list = c(‘Hpca’) ???????????# List of genes to plot, you can input multiple genes.

)

“`

Hpca

Hpca

  1. Generate a Clustering Plot for a Single Cluster

“`R

object <- Create_object(

FilePath = ‘E:/AAAWork/BSTViewer_project/subdata/L13_heAuto/’,

barcode_pos_file = ‘E:/AAAWork/BSTViewer_project/subdata/L13_heAuto/barcodes_pos.tsv.gz’,

out_path = ‘C:/Users/R/Desktop/temp/TestL6/single/’,

png_path = ‘C:/Users/R/Desktop/temp/he.png’,

point_size = 2, ?????????# Same as above.

Single_cluster = T ??????# Whether to generate a clustering plot for a single cluster (default: False).

)

cluster1

cluster1

Single?cluster

Single?cluster

最近文章
av免费在线观看免费在线观看 | 成人3D动漫一区二区三区在线观看 | 蜜柚av女优在线观看 | 国产护士囗交吞精视频 | 欧美性久久久XXX | 国产污视频在线观看 | 一级做a爰片久久久杨思敏 一级婬片A片试看45分钟 | 欧美精品一二区白人TV | 免费无码国产v片在线观看视频 | 岳伦做爰全A片免费 | PORN国产最新91 | 一级A片黄女人高潮网站 | 西西大胆色情一区二区三区 | 手机在线不卡无码操三八 | 特级婬片A片AAA毛多水多动漫 | 欧美成人精品欧美一级私黄 | 国产美女永久免费无遮挡 | 丝袜秘书一区二区三区四区 | 好91亚色网站视频网站 | 国产十八 熟妇AV成人一区 | 囯产精品久久久久久久久在饯观看 | 国产精品成人aaaa网站女屌丝 | 国产国产乱老熟女视频网站97 | 白丝 自慰到流白浆竹菊 | 水户香奈中文字幕无码 | 884aa四虎影成人精品一区 | 18国产又黄又爽又猛的A片 | 成人网站在线观看一区 | ***天天综合网无码 免费在线观看午夜福利 | 91人妻人人做人人爽蜜臀 | 少妇伦子伦精品无码styles | 成人免看一级a一片A片影视片 | 少妇一级婬片免费放播放 | 国产精品海角社区视频 | 欧美色图一区二区三区 | 张雨绮被狂c躁到高潮视频 粉嫩AV绯色AV一二三区 | 人人妻人人玩人人爽 | 无码av久久久蜜桃成熟时电影 | 人人操人人干人人玩 | 性生交大片免费看A片 | 国产婬乱A毛片视频中文 |